Genome (Xenia sp. version 1)
| File | Entries | MD5 |
|---|---|---|
| Genome scaffolds | 168 scaffolds | 94d275b97ddf49df015ea045b6423cb4 |
| Transcripts | 29867 transcripts | 28e79350ae1a74c635acdc4e1cef8842 |
| Proteins | 28010 proteins | e39a22f76cb0d22a8b766cd4dd1c4ee7 |
| Gene annotation (gff3) | 29015 genes | 4e0bb9b5b3631d3cf8d7255038853118 |
| Gene annotation (gtf) | 29867 transcripts | 029c5b82928e55275a2c98bf65a5540f |
Search table for systematic (e.g. Xe_002591) and gene names (e.g. LePin)
Data and code availability
- Sequencing reads at NCBI SRA BioProject PRJNA548325
- R Code at GitHub ciwemb/endosymbiosis
- scRNA-seq analysis intermediate RDS objects
- Bulk RNA-seq data
Downloading all data
Data, code, and results can be downloaded individually using the links above. Alternatively, all data hosted at cmo.carnegiescience.edu can be downloaded using:
git clone https://github.com/ciwemb/endosymbiosis
wget -r -np -nH --reject="index.html*" \
http://cmo.carnegiescience.edu/endosymbiosis/